Package: scBio 0.1.6
scBio: Single Cell Genomics for Enhancing Cell Composition Inference from Bulk Genomics Data
Cellular population mapping (CPM) a deconvolution algorithm in which single-cell genomics is required in only one or a few samples, where in other samples of the same tissue, only bulk genomics is measured and the underlying fine resolution cellular heterogeneity is inferred.
Authors:
scBio_0.1.6.tar.gz
scBio_0.1.6.zip(r-4.5)scBio_0.1.6.zip(r-4.4)scBio_0.1.6.zip(r-4.3)
scBio_0.1.6.tgz(r-4.4-any)scBio_0.1.6.tgz(r-4.3-any)
scBio_0.1.6.tar.gz(r-4.5-noble)scBio_0.1.6.tar.gz(r-4.4-noble)
scBio_0.1.6.tgz(r-4.4-emscripten)scBio_0.1.6.tgz(r-4.3-emscripten)
scBio.pdf |scBio.html✨
scBio/json (API)
| # Install 'scBio' in R: |
| install.packages('scBio', repos = c('https://amitfrish.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/amitfrish/scbio/issues
- BulkFlu - Gene expression profiles of flu and pbs sample.
- SCCellSpace - Single-cell cell space.
- SCFlu - Gene expression profiles of lung cells after influenza infection.
- SCLabels - Single-cell classification into cell types.
Last updated 4 years agofrom:0b89273888. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 10 2024 |
| R-4.5-win | OK | Sep 10 2024 |
| R-4.5-linux | OK | Sep 10 2024 |
| R-4.4-win | OK | Sep 10 2024 |
| R-4.4-mac | OK | Sep 10 2024 |
| R-4.3-win | OK | Sep 10 2024 |
| R-4.3-mac | OK | Sep 10 2024 |
Exports:CPM
Dependencies:codetoolsdoSNOWdotCall64fieldsforeachiteratorslatticeLiblineaRlimmamapsrasterRcppsnowspspamstatmodterraviridisLite
